Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
SKCM rs34292685 chr11:64049021 C/T 1.39E-10 100 14.8 17.62 6.83 KM Plot
SKCM rs34350172 chr19:48668136 T/C 6.73E-5 101 15.38 14.8 11.73 KM Plot
SKCM rs34472427 chr19:48678702 C/G 6.73E-5 101 15.38 14.8 11.73 KM Plot
SKCM rs34514973 chr11:64543927 G/GT 6.62E-7 100 14.73 15.73 8.8 KM Plot
SKCM rs34644236 chr19:48683973 C/T 6.73E-5 101 15.38 14.8 11.73 KM Plot
SKCM rs34811835 chr19:48667738 T/C 6.73E-5 101 15.38 14.8 11.73 KM Plot
SKCM rs34909809 chr19:48666983 G/A 7.81E-5 100 15.63 14.8 11.73 KM Plot
SKCM rs34925223 chr14:100923713 C/T 0.000106 100 15.13 16.35 12.27 KM Plot
SKCM rs35346855 chr2:180841233 A/AC 2.92E-5 101 9 13.72 15.3 KM Plot
SKCM rs36042 chr5:148439782 G/T 1.84E-5 100 15.02 13.8 9 KM Plot
SKCM rs370374472 chr12:53357870 CTGTT/C 4.59E-5 101 16.58 12.68 13 KM Plot
SKCM rs372551714 chr4:119792816 C/T 0 100 14.85 13.73 6.33 KM Plot
SKCM rs372950123 chr12:106055676 AG/A 0 99 14.85 13.73 6.33 KM Plot
SKCM rs3729526 chr19:48669750 C/T 6.73E-5 101 15.38 14.8 11.73 KM Plot
SKCM rs3730842 chr19:48673000 T/C 6.73E-5 101 15.38 14.8 11.73 KM Plot